Index

Symbols

--app_version tcdo_pg_tools-fusion-merge command line option --enzymes tcdo_pg_tools-coverage-calculator command line option --filter_by_header tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option --filter_crap tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option --fragpipe_dir tcdo_pg_tools-coverage-calculator command line option --fusion_table tcdo_pg_tools-fusion-merge command line option --ill tcdo_pg_tools-fusion-merge command line option --info_table tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option --input_csv tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option --input_metadata tcdo_pg_tools-fusion-merge command line option --merged_fasta tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option --no_uniprot_headers tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option --output_fasta tcdo_pg_tools-fusion-merge command line option

--output_tsv tcdo_pg_tools-coverage-calculator command line option --result_type tcdo_pg_tools-fusion-merge command line option --unique_peptides tcdo_pg_tools-coverage-calculator command line option --unique_proteins tcdo_pg_tools-coverage-calculator command line option --upset tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option --upset_path tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option --version tcdo_pg_tools command line option -fa tcdo_pg_tools-fusion-merge command line option tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option -i tcdo_pg_tools-fusion-merge command line option tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option -r tcdo_pg_tools-fusion-merge command line option -t tcdo_pg_tools-fusion-merge command line option tcdo_pg_tools-merge-fasta command line option tcdo_pg_tools-merge-pg-results command line option -v tcdo_pg_tools-fusion-merge command line option

T

tcdo_pg_tools command line option --version tcdo_pg_tools-coverage-calculator command line option --enzymes --fragpipe_dir --output_tsv --unique_peptides --unique_proteins tcdo_pg_tools-fusion-merge command line option --app_version --fusion_table --ill --input_metadata --output_fasta --result_type -fa -i -r -t -v tcdo_pg_tools-merge-fasta command line option --filter_by_header --filter_crap --info_table --input_csv --merged_fasta --no_uniprot_headers --upset --upset_path -fa -i -t

tcdo_pg_tools-merge-pg-results command line option --filter_by_header --filter_crap --info_table --input_csv --merged_fasta --no_uniprot_headers --upset --upset_path -fa -i -t