tcdo-pg-tools¶

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Documentation Status

Commandline tools to support proteogenomics analyses at MSK TCDO and beyond

Free software: Apache Software License 2.0
Documentation: https://tcdo-pg-tools.readthedocs.io.

Features¶

Merging RNA fusions across multiple samples which were called by CTAT-LR-Fusion or processed using FusionInspector. Currently also needs a metadata sheet from our internal isabl_utils package.
calculation of AA seq coverage across multiple enzymes using fragpipe results

Credits¶

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.